Generally speaking, not a good idea to filter by Unique Values/IDs. Over time you may find your data filter's definition is quite large referencing a lot of unique values.
I recommend adding a Filter Flag column and add logic to its Value Override to set it to "Yes" or "No". In this way, you can control elements filtered out via the Data Filter settings within the transform itself and more easily and clearly troubleshoot any rows that should or should not be filtered out.
If you find you're writing a long IF statement to accommodate all the unique values and/or other conditions, try incorporating the TableMatch function.