Hello Virgile,
The following document describes which PTFs are needed for "LPP Licensing Simplification" to activate.
https://public.dhe.ibm.com/systems/support/planning/transfer/IBM.i.Price.Change.and.Simplification.pdf
Apply the PTFs listed (or rather newer ones which already superseded those on the original list) and re-IPL the system. After that you should not be seeing any more of those pesky "License missing" messages.
Hope this helps.