As juanjosejarillo mentions, reviewing the allocation definition between the two objects is a terrific place to start. More information about defining allocations can be found in the online Help documentation (accessible while viewing your Apptio web site and clicking the Help link at the very bottom). If you opt to review the Help documentation, I recommend searching for "Ways to define allocations" via the search box in the top right corner.
Additionally, I recommend familiarizing yourself with the transforms backing each object being allocated from and to.
Afterwards, you'll need to start making some decisions based on your findings. For example...a recent finding for me was my target (aka to) object was defined with the wrong Identifier. I wanted to allocate and load costs into it given data found in two columns. Previously, I set the object's Identifier referencing one column. Later, I created a new column in the backing transform as a concatenation of the two columns, reset the objects Identifier to the new (concatenated) column, and voila! =)
My example may certainly not apply to you, but my point is you need to be aware of the backing transforms and the allocation definition before you can take any real action.