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Depending on the level at you want the invalid data to be accepted, take a look at setting the "Handling of non-compliant Interchanges:" value in the inbound ISA/ISE envelope to Accept: https://www.ibm.com/support/knowledgecenter/SSDF7K_9.0.0/com.ibm.help.spe_admn.doc/r_ASCX12Inbnd_ISA_IEA_EnvFields ...

Hello Reddy: My ITXA support team has identified a possible issue with large input data to ITX maps using the SPETransform Service. I a don't know if it's the same issue that you are encountering. There is no fix for this as of yet. Could you please open a new support case with the IBM Transformation ...