Hi… there is a lot difference b/w two options
-if u install as a Application ,u have to start the IS manually.
-But if u install as a N/T service IS will start automatically once the server is up.
Coming to Impact
if u install as a Application ,u have to start the IS manually and hence server performace will be good unitl u start IS.
and if u install as a N/T service ,u need not start the IS very time manually.
#webMethods#Integration-Server-and-ESB