Paoloc,
At some point, we changed the location of the generated Java from JavaSource/src to EGLGen/JavaSource.
This was done so that we could "delete" the packages and Java Source under EGLGen and not affect any non-EGL generated Java Classes. It all still works as all the project properties know how to deal with it.
You would still put the native classes under src.
While Ji Yong is correct that you can change it, I would suggest leaving the locations as they are created in the new projects as your projects are setup for the Classpath to reflect these locations.
take care.
Mark
markevans