Make sure you log this with support to get a bug logged.
You probably already have a work around, if not you could try the following.
As a search prompt query isn't run until you search, base the two search prompts on different queries. Add a filter to the second search prompt query based on the first search prompts parameters. You can make this filter optional so that the second prompt can be run even without the first being searched.
------------------------------
Marc Reed
Reporting Lead
------------------------------